biology/haplohseq - The NetBSD Packages Collection

Identify regions of allelic imbalance

Haplohseq identifies regions of allelic imbalance (AI) in sequencing
data obtained from impure samples where AI events exist in a
potentially low proportion of cells in the sample.  Input to the
software includes a VCF file of genotypes and estimated phased
genotypes.

Source version: haplohseq-0.1.2.2
Maintainer:
Website: https://sites.google.com/site/integrativecancergenomics/software/haplohseq
License: mit
Package history: cvs, hg, git

Build dependencies

devel/boost-headers pkgtools/mktools devel/gmake pkgtools/cwrappers

Runtime dependencies

devel/boost-libs lang/python312 lang/python312 devel/boost-libs

Binary packages

OS	Architecture	Version
(none)

Binary packages can be installed with the high-level tool pkgin (which can be installed with pkg_add) or pkg_add(1) (installed by default). The NetBSD packages collection is also designed to permit easy installation from source.

Available build options

(none)

Known vulnerabilities

(no vulnerabilities known)

The pkg_admin audit command locates any installed package which has been mentioned in security advisories as having vulnerabilities.

Please note the vulnerabilities database might not be fully accurate, and not every bug is exploitable with every configuration.

Problem reports, updates or suggestions for this package should be reported with send-pr.